WebJan 16, 2014 · Our main demographic analysis is based on the Generalized Phylogenetic Coalescent Sampler (G-PhoCS) developed by Gronau et al. and which we applied to 16,434 1 kb loci chosen via a strict set of criteria to obtain putatively neutral loci . WebJun 8, 2015 · For example, the pairwise sequential Markovian coalescent model described a gradual decline in imagined ancient dog population size beginning 50,000 years ago, whereas their Baysian-based Generalized Phylogenetic Coalescent Sampler associated this population shrinkage with dog divergence at 15,000 years ago.

G-PhoCS – Generalized Phylogenetic Coalescent Sampler

WebG-PhoCS – Generalized Phylogenetic Coalescent Sampler . G-PhoCS - Siepel Computational Genomics Lab . G-PhoCS - Siepel Computational Genomics Lab . SHOW MORE . SHOW LESS . ePAPER READ . DOWNLOAD ePAPER. TAGS ... WebEffective population sizes (Ne) based on coalescent units (Cu), and divergence times estimated using the Generalized Phylogenetic Coalescent Sampler (G-PhoCS). The branch ranges (or width ... kghl research uk ltd

G-PhoCS/README.md at master · mewinsto/G-PhoCS · GitHub

WebG-PhoCS - Siepel Computational Genomics Lab Webbased model, implemented using the Generalized Phylogenetic Coalescent Sampler (G-PhoCS; Gronau et al. 2011; supplementary table S5 –8 and methods, Supplementary Material online), to infer the neutral demo-graphic history of divergence and gene flow among different lineages of Limenitis. Preliminary results, allowing no migra- WebDec 17, 2015 · Demographic inference with G-PhoCS. We used the Generalized Phylogenetic Coalescent Sampler method (G-PhoCS) to infer the demographic history of wolves and dogs, including ancestral population sizes, divergence times, and rates of gene flow (Fig. 6 −8 and an average generation time of 3 yr (Fig. 6). If a slower mutation rate … kghl stream